List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?

Spider 15.10, 17.12 /cryoem/spider/ yes

IMOD 3.13 /cryoem/ yes

Web 15.10,17.12 /cryoem/web/bin/web_linux yes

jweb 15.10,17.12 /cryoem/web/ yes

em2em 071217 /cryoem/em2em/em2em.e yes

image2000 /cryoem/image2000/ no

MRC/Nigel Unwin helical software /cryoem/helix no

Situs 2.2 dl380/cryoem/Situs_2.2/ no

EMAN 1.9 /cryoem/EMAN yes

EMAN2 01-14-09 /cryoem/EMAN2/ no

Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes

ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes

frealign 8.08 /cryoem/frealign_v8.08/ yes

PDB Viewing/Manipulation/Rendering

Program	Version	Location	Launch Command
Deepview/Swiss PDBViewer	3.7sp5	/cryoem/SPDBV/	/dl380/cryoem/bin/spdbv
Pymol	0.98rc3	/dl380/cryoem/pymol/	/cryoem/bin/pymol.com
Chimera	1.2540	/dl380/cryoem/chimera	/cryoem/bin/chimera
O	10.0.1	/dl380/cryoem/ono_10.0.1	/cryoem/bin/ono
Gerard Kleywegt Software Suite	downloaded 1/19/06	/cryoem/bin/gerard/	various
Rasmol	2.7.2.1.1	/dl380/cryoem/bin/rasmol_bin/	/cryoem/bin/rasmol (32-bit version)

Segmentation

Program	Version	Location	Installed on cluster?
Amira	3.1	/cryoem/Amira-3.1/	no
Amira	4.1	cem02	no
IMOD	3.13	/cryoem/	yes

-- BillRice - 29 Mar 2006